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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027846 Open in IMG/M |
| Scaffold ID | Ga0209180_10001288 Open in IMG/M |
| Source Dataset Name | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12418 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (81.25%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California, Eel River Critical Zone Observatory | |||||||
| Coordinates | Lat. (o) | 39.7291 | Long. (o) | -123.6419 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003226 | Metagenome / Metatranscriptome | 499 | Y |
| F007820 | Metagenome / Metatranscriptome | 344 | Y |
| F044122 | Metagenome / Metatranscriptome | 155 | Y |
| F059287 | Metagenome / Metatranscriptome | 134 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209180_1000128810 | F007820 | GGAGG | MRFRTSMVLVTLFVACFTIAAWSKPPTVQPSPGPLLPTPDTQSLSGRIAAVGDAEFSVQVTKDLDMNTVQFLVDDKTKVEGKLAVGAQATVEYRSNGDKKIAVHVIVTPTSGMSSY |
| Ga0209180_100012883 | F003226 | GGAG | MSKQLSVNTSVCSEYQRLLEESQSALEIWNEHRAEFCQFRFIGREAGDELLRLQAKYARAYTVLQNHERNYSLCQLVSRIEVPDSENSSDTLSDYELCT |
| Ga0209180_100012885 | F059287 | AGGGGG | MSHLMKLAEVLRDIGEECSKSEIEQALGLCMGFADRVSREREDAAEDPESLGQSISTKYSGLPN |
| Ga0209180_100012889 | F044122 | GGAG | MHVPTGRNEKRTERAVTVEVLRLDESQPNVRTVTENVSPRGARIVTDCDCTPRKHVLVTAPERGVKSLVWVIYCQRVESTKFAIGLQLIVRVEEWGKPASSD |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |