Scaffold Ga0209180_10001220

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10001220
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 12738
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (65.22%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001816	Metagenome / Metatranscriptome	630	N
F004426	Metagenome	438	N
F013876	Metagenome	267	Y
F028763	Metagenome	190	N
F100464	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000122013	F100464	N/A	VTVSVPAPVGVKVTEQLPANRLQLVAGLNEPPAFPDEVNLICPVGVLAVPLAVSVNVEVHVEPLFVTTDDGAQLTTVEVERPITVSVNDWLAVLVLKVCFVSPL
Ga0209180_1000122015	F013876	GGAG	MSSIDDPLLKELLAALKEDTQRMAADLLSIITTNALIAVFALFLAIASLARIILFEQTPFRMGGPGPVPGLFETALTFVLFALSVVSIYNLLRLRERYARLQALAEKLGR
Ga0209180_1000122016	F001816	N/A	LPLSPDTKKEAEKRLTVLKMIELFADKCAKSTLLNGPFGGDDRAFDRLLGPAGILTRTSLVTATMDGRVTYYGRTEAGKVYQQVLDTELNFLDPYTGGEVWKK
Ga0209180_100012202	F028763	AGGAG	MNEPAPSWRRIALGVFAIIMGCVSLVGLSSTGYYYGLGIFGGAYGAVMIPLGVALIAKKEAVTG
Ga0209180_100012208	F004426	GAG	MRQEIPALATRRRAHPARTVHSMVDDELRVSTHKSIIKTLGRQYTDAAQFFVELVVNSWMWGEASKVEIRIPESGSTIEYEEWGNGMDLTGLREFLTKGKLTDEGFSPKYKRPIRESYGMGSLAWLTVGKDLELQVHKGRFDRTITLTENLIDKHWDATDQSTWRPLRLIQAPLDHDGLRIRIRSLTKKPDPVDVRRALLARANVLALRGYGPFEVSVNGELVKPEELRGSTLVPVNITTEYGKITGEIMIMPISKVRAGISEAGISVQQKHITCLQHQFFGLDQYRTHGLSRIQGWVNADFLRRLPGGNEFEHDSAQWRVFEKAMRGFVKNKVYKFLKQTASRRELRSIQYLNREIAERLRRSLRRNVQILSKAMLNPRVAPKINVVPGKTRKEIVLGERKRRRGKRHSREATRSIIHLKDQILAFDVAHGGDRGQAYVETDKSGVRTVFVNMDHPMWYVEAGMTPTKLRYCIRQILERSIAEEILPVSPSTPEETFSTLDALYNDALA