Scaffold Ga0209180

Basic Information
Taxon OID	3300027846 Open in IMG/M
Scaffold ID	Ga0209180_10001081 Open in IMG/M
Source Dataset Name	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209180_10001081 Open in IMG/M

Source Dataset Name

Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	13439
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	12 (63.16%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

13439

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

12 (63.16%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Archaea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Archaea

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: California, Eel River Critical Zone Observatory
Coordinates	Lat. (^o)	39.7291	Long. (^o)	-123.6419	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California, Eel River Critical Zone Observatory

Coordinates

Lat. (^o)

39.7291

Long. (^o)

-123.6419

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002008	Metagenome / Metatranscriptome	604	Y
F017117	Metagenome / Metatranscriptome	242	Y
F021075	Metagenome / Metatranscriptome	220	Y
F057257	Metagenome	136	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000108111	F002008	AGGA	LETTDKKILKTCLVCKRTFLGWFSEKYCSADCRMEGNRLKARLRKRKSRKVGDLKEGVISQQLGELGLAETQYPMYNHEIVPTMYANFNFYHARDGKRHVRSYYDLLRDIAKLNGTDLRTILANMSPRDEKN
Ga0209180_1000108113	F057257	AGGAG	VDSSDSSPRSSASGRAEVYRPEEQVAGLASVFLSRGHSFGYGLYFSKTRIIGVRKRRTSLVFGLALGVPVLALLLYLLYLDFVLRFSGPLYGVFLLPILPIVVDLGVRRLRHAVPERIVQENTPTTTSELGSKIDFELKREEIAELLMKHVIGGWLFPQPGYLRITSKSHLEKPIEIKIHGIKQFQTLREIVIEFAARQPQVRALEY
Ga0209180_1000108117	F017117	AGGCGG	LVDISELIVWSTIVQTIVLSLTLVIFTLSFRSQNKAIQEQAYQKVMDDYGDAMRMLSERPELYAFQLELFNRSRLPLGREQESYSREEMVIRNYVIMLYGFFERVHFLYRRKWIDEDTWKQWAAFLEVVAAHPVFGEVHQSSREMFDKPFQDYVSGILSRKK
Ga0209180_1000108119	F021075	AGTAG	MQLSRNEKILAITFAVMSICGILFTPAGLETRPLSTLRSYGLVPFFLAGTALDFASLILIFKKPRIAAMTGIVAAIEYVFLAPGDQAQFFFVGVPVPAGITINEVVA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209180_10001081

Overview

Ecosystem & Geography

Associated Families

Sequences