Scaffold Ga0209180_10000924

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10000924
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14156
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (52.94%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009132	Metagenome / Metatranscriptome	322	N
F018143	Metagenome / Metatranscriptome	236	N
F031428	Metagenome	182	N
F065609	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000092415	F018143	GGCGG	MLSMREKAFAVISFEAQNRGVTVQELLRAVIVPEWARENVQASTTPRTMMQITPDQTKPSMSARQRDSKLAITVGQLRT
Ga0209180_1000092416	F065609	GGAGG	MKNVKPGDRVWVKTPRAIVERKVGTIVAAKKTPNGVRYVVEWEVDLLELPNGHHPGYLANEIVPIS
Ga0209180_100009244	F009132	GAG	LRIRDVSDRFRGSGYSMVKRKIVDSSPEDLSNLQRLVGPENVLAHCAGVNYQVYVTDTRLLVGKRFATGEKFMNVPTASINTLELITKSLLPPLTFAVLGAIASFLIWWFPGTRMLPLPVFPYDVAMLAGLVFFVGSLIVAWWRVGIAVLRIRVNDSQDPITVKLVSTSKAEAVFKALKG
Ga0209180_100009246	F031428	N/A	MRKMLEPFSTGPVAMSAVRFGDSDLAKILRGVLVIVAAGLMILPAYLNYEIWKTGFNPVVSMAISLQLFAIGIVLFILAVGKERRAPKSQPQ