Scaffold Ga0209180_10000051

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10000051
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57352
• Total Scaffold Genes: 69
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 53 (76.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000188	Metagenome / Metatranscriptome	1692	Y
F001619	Metagenome / Metatranscriptome	662	Y
F002414	Metagenome / Metatranscriptome	561	Y
F003970	Metagenome / Metatranscriptome	459	Y
F004677	Metagenome / Metatranscriptome	428	Y
F006480	Metagenome / Metatranscriptome	372	Y
F006913	Metagenome / Metatranscriptome	362	Y
F040483	Metagenome / Metatranscriptome	161	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000005110	F003970	GGAGG	LLSDHVFHLFGRSVTITGREQFLAVVILVIAATAWAVQQFRRRRAVVVQRSAVSDQVVYELSRIADALERIANRPADQYITAASDRQAEEPGRISLSMFGR
Ga0209180_1000005140	F004677	AGGAGG	LTRFNTQPPWEFLLSASRVSLQSYELSRLSHAANLRKEIAALLDQWVDESSAAMLARYVMDLRERTSRAPETAPAAESLQKNGHAVSDNLFPDRAASPRVNRGHA
Ga0209180_1000005142	F000188	GGAGG	VPVKPELAFDVCWEVYRAAREVLETKRGVSALNWKDTGKFLWRPDFRARLNEWVADFALAGQAALDGPEYASRMVMFRLYYLGLTPYENARHFLGLSEHSWVNWSEEIRHRCGRELLRRNMFPPRKYFQTCG
Ga0209180_1000005143	F006913	GGAGG	MDPETKRAWHRLQKEVKEDAPIVLRGLASSGKRISQRLYSAVVRGYKSWMSRAKEWEVSFGGRKALVSQLTRVRLRSPIYKV
Ga0209180_1000005156	F040483	GGAGG	MPKSLWAHEPILTPERKLWRAVLEQAYLDSELPRSRDGSEPDDCARARRYLRADSRFEAANLELVCDFADLPAGRLVLWARQRYPLAA
Ga0209180_1000005161	F001619	AGG	VRDFLQRLLQGRYVRLLEEEVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQPLPRLRKRSWHQIQAWRETESCRLRPGSAGVARDAAMNSEGREEARPNGPVSRS
Ga0209180_1000005167	F006480	N/A	MRRVFIGGITLLLCGVISARSKPEPLVFVFLRVDRQQDVAILRPMIAPDIGVQLDSGPRELKSGTVLHCTTSTRERPAIVEGQTAQVSELVLDCLPAGKAGGDHKFVVKGLDFSARR
Ga0209180_1000005169	F002414	GAGG	LRFEVLQSRITVLRETHETPESVAQRLERAGGINRFGEANYRAVWGWNRLAWIGGKFEERDPATGSFLREVVELRQEPKYAAVNRWHIERWLPPEVYGSPRAWYAQTIERENGVSVPALGPYPSRGEYEHCFTLEGPRGEFVQLTPTVAERIARAIEFSRAHS