Scaffold Ga0209180_10000023

Overview

Basic Information

• Taxon OID: 3300027846
• Scaffold ID: Ga0209180_10000023
• Source Dataset Name: Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 90982
• Total Scaffold Genes: 91
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 85 (93.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil → Vadose Zone Soil And Rhizosphere Microbial Communities From The Eel River Critical Zone Observatory, Northern California To Study Diel Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: California, Eel River Critical Zone Observatory
• Coordinates
  • Lat. (^o): 39.7291
  • Long. (^o): -123.6419

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001966	Metagenome / Metatranscriptome	610	Y
F005419	Metagenome / Metatranscriptome	401	Y
F007165	Metagenome / Metatranscriptome	356	Y
F041038	Metagenome	160	Y
F070346	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209180_1000002331	F041038	GGCGG	MSQLLPYLFLGLLLSAVLAWWVWDAIVHRRAAEVLAPRQHRSSVRSIGLQRDLGERIFGPEDWDFVSSETTWEIHRMFQHERTVLAIAWLRRTRLQVSQVMRAHLAVAQHSEDLKLATEMRLAMSYLLFLVLCNSLIGWVWLYGPVRTRKIIGQTLQWAAQLRGAFEQLMARVDPASCRVVGANLNHETVRS
Ga0209180_1000002338	F001966	N/A	MDPTDKPDPYGEWVLFGIKDRPDGAPLPVDEDLLAAARRAWPRVLAHVRAELFDRELGPERTALAAEVWDRVLRSVARTRLRNTNLRPPISDLESYLIGVFHHRFNRLLRQEQRRAETIELFASVADLERFEAALDTRWTEQLERDIAARQITSRMNPWTKKVWLARQYKYSWKQVAGWLGVTEQQAKMKYYYNLEKIRQSILRELKRRTPKKAK
Ga0209180_1000002358	F070346	GGAG	MKRLSSAMSFRWRKLLHFAAWGALAVVIFASAPFLFDLVGRGIGWIIGLFPHPDELWKECTWCL
Ga0209180_100000236	F007165	AGGAG	VDLMAAPDRRKFQVRCDAGSPGRFEVGTDTLSVRVGQRMRGGKEEEMWDSVHILCKEQPDGSLTVEVLVCHPDWEEAQTIAAIHSRPQDGDTAAPGLKCDLELRRSGGLHRASGAQ
Ga0209180_1000002363	F005419	AGGAGG	VAAGVTEVVGEGKDLQASRSSRGTRKLRTGQANGAEGQRFFLAKPGGSHGVPELSKEFPGEAEAMVESLKTGLSYFVVSEWRGVADFSGRKPQLSREAVRGAPKAG