Scaffold Ga0209271_10090391

Overview

Basic Information

• Taxon OID: 3300027845
• Scaffold ID: Ga0209271_10090391
• Source Dataset Name: Marine sediment microbial communities from the Atlantic coast under amendment with organic carbon and nitrate - tdAd00.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1268
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Sediment → Marine Sediment → Marine Sediment Microbial Communities From The Atlantic Coast Under Amendment With Organic Carbon And Nitrate

Source Dataset Sampling Location

• Location Name: Atlantic Coast
• Coordinates

Associated Families

Family	Category	Number of Sequences	3D Structure?
F095491	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209271_100903911	F095491	N/A	VLNDALYRALKDFSTLLPRLMVKVSPVGRLGVLGSAGAFAEKLIEELEKLIEPEIKSFLANSTERVLERAAEFTIAKIDEPASIEFRATFVDFMLSKSPAFFLEAASDELIGDMGAVVELSARHLAEAPDMHAGIHRWIDRVMDYSSDKTLGEVLQLEESAARPPIDALADATWPAFIAVLASPQAQAWMDTLLDELIEEYERIAD