Scaffold Ga0209501_10202713

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209501_10202713

Scaffold Ga0209501_10202713

Overview

Basic Information
Taxon OID	3300027844 Open in IMG/M
Scaffold ID	Ga0209501_10202713 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1276
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	75.2588	Long. (^o)	-156.0227	Alt. (m)		Depth (m)	208
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F016208	Metagenome	249	Y
F030565	Metagenome	185	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209501_102027132	F016208	GGA	MLFSKKDQHTYGLLLRIIGSLMWVYITAPIGAFVVILGEIVTWLKFDD
Ga0209501_102027133	F030565	GGAG	MDWIYTIKVVTLALCWTNYILNLRESKWDFGEMSNIGWLMAVLGWTNAIL

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