NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209501_10051926

Scaffold Ga0209501_10051926


Overview

Basic Information
Taxon OID3300027844 Open in IMG/M
Scaffold IDGa0209501_10051926 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_134 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2970
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)75.2588Long. (o)-156.0227Alt. (m)Depth (m)208
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007771Metagenome / Metatranscriptome345Y
F018265Metagenome / Metatranscriptome236Y
F025858Metagenome / Metatranscriptome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0209501_1005192611F025858N/AKEFSSEVNCWNYYDNGAGESKMLNSYGTQVLDHQGNKPDKDYMKKHRPAHRVYPTRMYKNHGGPLVWLTCDIKGRNEGL
Ga0209501_100519263F018265GAGMSMELHTLRAVKITQNIFELRKVNREIVEVSKIMEVLERRKTMLENSF
Ga0209501_100519267F007771N/AMETIIHAKNIDKKVRLALYGMLHHSAIKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTRITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIETEKENG

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