Scaffold Ga0209798_10403377

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0209798_10403377

Scaffold Ga0209798_10403377

Overview

Basic Information
Taxon OID	3300027843 Open in IMG/M
Scaffold ID	Ga0209798_10403377 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T4Bare3Fresh (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	639
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment → Wetland Sediment Microbial Communities From St. Louis River Estuary, Michigan Under Dissolved Organic Matter Induced Mercury Methylation

Source Dataset Sampling Location
Location Name	USA: Michigan, St. Louis River estuary
Coordinates	Lat. (^o)	46.6972164	Long. (^o)	-92.3279105	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009643	Metagenome / Metatranscriptome	315	Y
F104566	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209798_104033771	F104566	N/A	VPVDHPMTANEVLAAFETRMKQRSDIGVVNRALNVFLEPRNPFEPARTRKPKMETVVFGMLFAVVLAAFLFFNLAAPRLQVYP
Ga0209798_104033772	F009643	AGG	MSNSWKVQLDGVLRKGEVVGLYFTTAMLIVVEFCFVYWLHRIQIPEASSKAASGFIVMPPWYQKPRFEVTLLLTILAGLLFSVCWGLWNLWRKRTDTGSWESAVQSVKQRVRTTTSVAALTGVELALVT

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.