Scaffold Ga0209580_10001796

Overview

Basic Information

• Taxon OID: 3300027842
• Scaffold ID: Ga0209580_10001796
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9572
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003181	Metagenome / Metatranscriptome	502	Y
F009323	Metagenome / Metatranscriptome	319	Y
F011287	Metagenome / Metatranscriptome	292	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209580_1000179615	F003181	N/A	LRLDQGPTGELRVVDSGYTDRVQLDTASEEVLRIKALVMNSLSDLNKLYMVDRALYTNTPGIPLYMEFTPQSMRSMKTPLIISEVKLYTVEKFWGLRTLRITR
Ga0209580_100017963	F011287	AGTAGG	MSAVQNVEQATQLALDFVKRYYAFVFPVSARKEALRWIVDFDISFFNPRYARVRILAESGTIEDLKVTLGQLL
Ga0209580_100017965	F009323	GAG	MLDPIVIPTLYFIAVFQLILQAGVFYFAFRVTKLTGSFRAWTLIIASFALLTISNVTSLVLELSLPSDQIANLIQSAGTTTIIISSSINIAASISLFLGMFGLVKRFKGQAKPS