Scaffold Ga0209580

Basic Information
Taxon OID	3300027842 Open in IMG/M
Scaffold ID	Ga0209580_10000374 Open in IMG/M
Source Dataset Name	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209580_10000374 Open in IMG/M

Source Dataset Name

Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	25802
Total Scaffold Genes	34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (64.71%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

25802

Total Scaffold Genes

34 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (64.71%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location Name	USA: Pennsylvania, Centralia
Coordinates	Lat. (^o)	40.7999	Long. (^o)	-76.3402	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

USA: Pennsylvania, Centralia

Coordinates

Lat. (^o)

40.7999

Long. (^o)

-76.3402

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010111	Metagenome / Metatranscriptome	308	Y
F015370	Metagenome / Metatranscriptome	255	Y
F019380	Metagenome	230	Y
F025818	Metagenome	200	Y
F039376	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209580_1000037412	F010111	AGGAGG	MEYINNKGENIGSLTYSVSNDTSITINRIHDVTIVSTRDRNTGKVTTETFFGDSPYGK
Ga0209580_1000037422	F025818	GAG	MQSFKSILSSVSPQWFVLIASAVGITAASIRAFESEETKRKRAELKKQKELRCLTERISVYGRTVHRQFPTGDVVVSERDLALQLRKRPEVVVTALNLLLNEQRVQRAPLNGYWKLNS
Ga0209580_1000037426	F019380	N/A	MKWLALVLLVGMAYGQHCRKIEIDKSSSFCTVPDPAITPGEMNPSLACVSNADRPRSVTNSEKNAILRAYGYPTSTKKSTGEFEHWFPHWMGGSDGPKNIWFEPHAGKFGSLAKDKAELMLWRKVCVNKTMTLDQAKTAYLKGWTKLLPKK
Ga0209580_1000037428	F015370	GGAGG	MLNVSVAKIGELAVVGCEGRIIQSESAYKLREAVTSQTDSRIIVVELSEVRAIGGGGLGMLAFLQRWAREHNIRFLLFHPSKAVESQLKHAKSIAEFYIVSLEEMKALLAYANSRYALAA
Ga0209580_1000037430	F039376	N/A	MLKQIALLFLLLGMAFSQNHPVEVHLDDIRGRGVKCTTEVPTDFSCAIFFDVDPPIHDGIDIASVIGGEGGNLPQAPPAPVIREVSLILDGTLYTAVYDPPLKRDEKFSGLNRNDGIPARVDGDALFVKWPDGEEVKAKIIRRERINPGQPQPA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209580_10000374

Overview

Ecosystem & Geography

Associated Families

Sequences