NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209580_10000071

Scaffold Ga0209580_10000071


Overview

Basic Information
Taxon OID3300027842 Open in IMG/M
Scaffold IDGa0209580_10000071 Open in IMG/M
Source Dataset NameSurface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)89742
Total Scaffold Genes78 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)47 (60.26%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location
Location NameUSA: Pennsylvania, Centralia
CoordinatesLat. (o)40.7999Long. (o)-76.3402Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000136Metagenome / Metatranscriptome1961Y
F015624Metagenome / Metatranscriptome253Y
F035041Metagenome / Metatranscriptome173Y
F043571Metagenome / Metatranscriptome156Y
F051484Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209580_1000007118F043571AGGAGGMTTSHKKLARLDEMAIVRRMLVLCLVLAPLCVAMAQQGKNTPAKGSVTGNYEGTAKNRAEEVIQVKFELTEKEGAMSGMIRSDHGDFTVTGGTHHGEDVTLEFDAGRPTGTITLKFAADKLSGTWSAGDDGGPVDVKKVAAQEETPKGKS
Ga0209580_1000007136F000136GAGGMAKAKLRILYGEGDGDVLAKQAAAFEKAGHVVQKAEGRKSVDEALKKSTFDLVILGSTLSRNDRHHLPYMVKKVNAETSVLVMHADGSRHPYVDACVDTGSSMDTVLNRIETMKIAGMMPRAAAAGAGR
Ga0209580_1000007161F035041N/ALLSEADARTAYDRLAAAKFREHKCADHLARLDMVEEPDSFTGRIRKLVTQGFKPKDAVELFLQEIELEYRNDPKTLARAKAEGEDFLRRLKAGLI
Ga0209580_1000007166F051484N/AMTNVDAGTIADGVYRNRALGLSCKVPAGWVLRTQEMNARDEPEAAAAASEEKSSPTRAPSATEEDRGGRVLLAAFSRPPDAKGEDVNASIVIAVEKVTTYPGLKEAAQYFGPLTEVAKAQGFIVDEEPYEIEMGTKVVVRGDFHKDVGTRVMRQSTVAFLAQGYAVSITVLGGTEDEVEELVDGVTFGK
Ga0209580_1000007174F015624N/AMKPKNRKIFDEDYRVLAVESQRLTIQGVRSGEVLTIVTQNPEAPLTAAEYPPGKLITLSDPSGATPN
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