Scaffold Ga0209580_10000015

Overview

Basic Information

• Taxon OID: 3300027842
• Scaffold ID: Ga0209580_10000015
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 281778
• Total Scaffold Genes: 265
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 216 (81.51%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F020432	Metagenome / Metatranscriptome	224	Y
F030792	Metagenome / Metatranscriptome	184	Y
F048482	Metagenome / Metatranscriptome	148	Y
F065602	Metagenome	127	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209580_1000001510	F020432	AGGAG	MMSPETGPNRLNMKFSESGRKVVIHLVRGLPPKISQDKKTITITFAQRFPARSKPSKP
Ga0209580_10000015109	F030792	N/A	MNPKRSDQNVQDRWLTIDEVRIVSDLRIMHAKVDELYNLVSALKQRHAEADVVKYADQPVLTEDIHKVDEIYLWFVKLKEENIAQRA
Ga0209580_10000015110	F065602	N/A	MNCFPQAYAYRRVPRFRLTNTTPVLLQFQTGLRVAGELHVISRNGGLLFLPGTFHPGVVVDLSFQTHRGPVVGKAEMLRPVTRTQQPFRFLAVADGDQRTLQTAFESGLYRNIDQEERIEELRASVAKALPKWKPPRSRRHLGAKLAIGLVALMGCLACVFCIHFFPN
Ga0209580_100000154	F048482	GGA	VRRDWATSNKKVKTKLRFQAYAGCMDYLSPHLIRLRQEIADLRNMHVLYANQSVHSAVEQAASEVRAGRLLQIKQELSKMRDYPLESRVWWDKVRKPNCAA