Scaffold Ga0209580_10000006

Overview

Basic Information

• Taxon OID: 3300027842
• Scaffold ID: Ga0209580_10000006
• Source Dataset Name: Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 637102
• Total Scaffold Genes: 599
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 424 (70.78%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil → Surface Soil Microbial Communities From Centralia Pennsylvania, Which Are Recovering From An Underground Coalmine Fire.

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania, Centralia
• Coordinates
  • Lat. (^o): 40.7999
  • Long. (^o): -76.3402

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000236	Metagenome / Metatranscriptome	1499	Y
F001511	Metagenome / Metatranscriptome	680	Y
F006821	Metagenome / Metatranscriptome	364	Y
F012297	Metagenome / Metatranscriptome	282	Y
F024849	Metagenome / Metatranscriptome	204	Y
F047881	Metagenome / Metatranscriptome	149	Y
F048612	Metagenome	148	Y
F083320	Metagenome	113	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209580_10000006101	F001511	AGGAGG	VEFVMFEDVQGQEVFVNPKRVIWVRETGDQRTVISCGRDDTFTVRLTPAQAVAALGATAR
Ga0209580_10000006125	F048612	GGGGG	MKDPIEVLRRKEAELEQLQEEVYALRLAGRLLKEKPLKDNEEQARGKVLQMP
Ga0209580_10000006206	F006821	AGG	MLAATAMLPIDLRIDRAQRFLRLIEEDAPLLAVRLAPLSAERQKSAKSYVQRLAERTRLELKELLEEKTLTGVADQNPSAAD
Ga0209580_10000006249	F012297	GGAGG	MNSMHYLYAAYIATWAIHGVYLTILVRKYSQIRREMERLKK
Ga0209580_10000006319	F024849	GGAGG	MEAQVRDWRVLSEAASQEQDPEKLIKLVEELNRALLYREIQTNRRLAMN
Ga0209580_10000006336	F083320	GAG	MWSRIFIFLLLAAGAMAQTAASSSPKIDNDFVHQQFGDFCNLDTQWSPLTADLNSDGIEDLVFVARCKNPLIDQDEKNYRVIDPMDSFYGYGNTTITTGMGQNDPRLHGLCVMVIHGSGADAWRSPNPQAKFVIINISLKTLSLKRMKVSKKRITNAIYVEEATGDEMTAAIFWDGKKYRYDPLGSGME
Ga0209580_10000006492	F000236	GAG	MEKKIFWIVFCILGLVADFVLPLWWALAATIPIAILSWWVAYRSDWF
Ga0209580_10000006599	F047881	N/A	MPAQAGENGAVRVSPMDQRGRPISTPVLRAAEEVSRRAIHHAEKLLVDPAVAANLLEEAAATVSRALKAKNTDERPVQDLGSYLFRAFLRRLNRTKKRQSLSADAADLDAFLSRMSSDPRRALEMKIFIDELLMQCDPAMRDMLCRRLGGSSWKEVGRAYRISSHAAESKFSQALQKVRKKLRLK