Basic Information | |
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Taxon OID | 3300027839 Open in IMG/M |
Scaffold ID | Ga0209403_10233061 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1061 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 190 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F007055 | Metagenome / Metatranscriptome | 359 | Y |
F020372 | Metagenome / Metatranscriptome | 224 | Y |
F058211 | Metagenome / Metatranscriptome | 135 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209403_102330611 | F007055 | N/A | NPVVYTIDKEFTSEVNCWNYYDNGAGETKMLNSYGTQVLDHQGNKPDKDYMNKNRPAHRVYPTRMYKNHGGLLVWLTCDLRSRHLEL |
Ga0209403_102330613 | F020372 | AGGAG | MPEETQEKKIQILIDGKEMLYSHQNMIAAINSFLPYLTNDDLDEMTKVFHTLKDHRRQKEYLSKLETLKHSWPYPDTIQQLEND |
Ga0209403_102330614 | F058211 | N/A | MPIPIENNSWDYVQGLIEKEINSAFKLRIKEDDNKMKFKEDHPYMIKLDETLKQYSIVKVADTNGAHHGADYQEMKQVILDALFTSYLGETI |
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