Scaffold Ga0209403_10233061

Overview

Basic Information

• Taxon OID: 3300027839
• Scaffold ID: Ga0209403_10233061
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1061
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F020372	Metagenome / Metatranscriptome	224	Y
F058211	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_102330611	F007055	N/A	NPVVYTIDKEFTSEVNCWNYYDNGAGETKMLNSYGTQVLDHQGNKPDKDYMNKNRPAHRVYPTRMYKNHGGLLVWLTCDLRSRHLEL
Ga0209403_102330613	F020372	AGGAG	MPEETQEKKIQILIDGKEMLYSHQNMIAAINSFLPYLTNDDLDEMTKVFHTLKDHRRQKEYLSKLETLKHSWPYPDTIQQLEND
Ga0209403_102330614	F058211	N/A	MPIPIENNSWDYVQGLIEKEINSAFKLRIKEDDNKMKFKEDHPYMIKLDETLKQYSIVKVADTNGAHHGADYQEMKQVILDALFTSYLGETI