NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209403_10170904

Scaffold Ga0209403_10170904


Overview

Basic Information
Taxon OID3300027839 Open in IMG/M
Scaffold IDGa0209403_10170904 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1319
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012722Metagenome278Y
F069343Metagenome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0209403_101709043F012722GAGGMKNIMIATSVAVLMSTTAFAKDCKYVQKIILDDNNVILSAKTEYICKESKPIIVLPPNTYTEVKKVRPRVVSHTDYVNGNFYNNEKGLDFLVKLIYNSN
Ga0209403_101709044F069343GAGMTYIKKHIMEIQELVWEFFDQDGQFVADETIKDKDDLISTVENNFGSMGVDIAKQEIFEIETGDHFS

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