Scaffold Ga0209403_10125997

Overview

Basic Information

• Taxon OID: 3300027839
• Scaffold ID: Ga0209403_10125997
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F015741	Metagenome / Metatranscriptome	252	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_101259972	F002078	AGGAG	MDIGAMFEGQGWFAIVGQIVLIFTAVTGALPDKFVQKIPVLGTVWPIFNWLAGNVFNNINHPKGMAAQADVEKEIDEAKAKIRVRAGMPDVLDGM
Ga0209403_101259973	F015741	GGAG	MKRRRKLGLELACLMFWTGCSFPLVELIPPIANFALGFYDHNDYYSKECLWYDEVRLNDDTKKWLLESNPPEIVSKDLSKVAKNNDLYKEVCKTDKGVADKLTSKASRVIDKTLMATGE