Scaffold Ga0209403_10125119

Overview

Basic Information

• Taxon OID: 3300027839
• Scaffold ID: Ga0209403_10125119
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1644
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019393	Metagenome	230	Y
F048575	Metagenome	148	N
F083382	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_101251194	F083382	N/A	METKERKHDMSDKIKDRDVLVSVDDAGDVAKKEYESFIKKQEEVVDDLDNQCYSEGETYD
Ga0209403_101251195	F019393	AGGTGG	MYEEIKTYADVDSFIEAHNGMWQMLRSTYKKIDQETVVIDNTTWKLKKGNMTCLTK
Ga0209403_101251196	F048575	AGGAG	MTALQNSILLDEEYEYEVSVLDLWKAKGIDDPYDAITVAMHTYDYPNPNVPEEEIEEHLSELWEERWYDYYV