Basic Information | |
---|---|
Taxon OID | 3300027839 Open in IMG/M |
Scaffold ID | Ga0209403_10086567 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 2125 |
Total Scaffold Genes | 7 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (42.86%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 190 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F012639 | Metagenome / Metatranscriptome | 279 | Y |
F029595 | Metagenome | 188 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0209403_100865674 | F029595 | AGG | MKCFESPSGLKNPILWHKRQSVRDFVKQKPMFSQLMAESKNCMIKHPELKNNVKGAIQCETIHPATMSQFNNYTFHTHPHNIPYPSEVDKATTKRLKKKYLLIGVVPQNRTYVFTDDDNFEKHISTI |
Ga0209403_100865677 | F012639 | AGGAG | MSSNNSGLVLNCTATYAIAAPAATVLSVTMQTSPTVAGVTELQVPLTENWIATDVYILAAAGAGGGVGATIIDPVVTMDKNRGRTLVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIIRMFATSTVLNGAAVSNIQFSVAISIV |
⦗Top⦘ |