NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209403_10036336

Scaffold Ga0209403_10036336


Overview

Basic Information
Taxon OID3300027839 Open in IMG/M
Scaffold IDGa0209403_10036336 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3856
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)79.2466Long. (o)-150.0613Alt. (m)Depth (m)190
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048921Metagenome / Metatranscriptome147Y
F101293Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0209403_100363363F101293N/AMKLTDLLKEAGIEMGKVYTDKDRPPFKVNEASEKIRVQGLGVYDHKSLSKKVGKMVDDLSKRNRKGNHTGLGKRQLGTLAAMWEALAEYEEKK
Ga0209403_100363366F048921GAGGMKLIKHPLKETYERMFGTLNEAKEEKVYMLNGMLWLSYSPNSGQTTRIKGRGWITNDSSEKNFDSGVKGFAKWSKTQKPIKKKTASNGSKVSLFRIPEYTGGDAKEYTIWGGDEKPKWRYLLVSLGKKIDVISVFHSKGEAMSWIGHTA

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