Scaffold Ga0209403_10019253

Overview

Basic Information

• Taxon OID: 3300027839
• Scaffold ID: Ga0209403_10019253
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5851
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023712	Metagenome	209	Y
F047110	Metagenome	150	Y
F058213	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_100192534	F023712	GAG	MYGLENHAPVMRDTITYELTWKNEDTNRVSSKKFTGEDGKDHSAMDEALELAQQADGNMWPWVLERDGEEIRHGWSGDLLNRGRLFPTCG
Ga0209403_100192537	F047110	N/A	MKTKKTNKMNTVVELNWKVKDLIRNKLSFEKWHLDVFDSPASKKVLNKIKAEAKELVEMKQAMLLTATD
Ga0209403_100192539	F058213	N/A	MICYECGTKAQRREIRNAKKETREPQITIKCGSWEKGQCEKCKKKKVYVTPISDFILVSH