Scaffold Ga0209403_10012410

Overview

Basic Information

• Taxon OID: 3300027839
• Scaffold ID: Ga0209403_10012410
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7744
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F041307	Metagenome	160	N
F056907	Metagenome	137	N
F065114	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_1001241019	F065114	GGAG	VMPSLGHGTGLLHRERETPESVSIEGLGCSGIAGAVVVPALRTMNKHLMPSPLYLSLYNPESLMSIFGVSERTEVATGSAPKVASCVKQKTQRLTDLTGDRYEKE
Ga0209403_100124102	F041307	GGA	MKDEKTDEPVLFCGVATGYETRVASLPECWLKMTSAMQTKYRKQKRAEYEALNPKKLDYKVIGTKRYKKSY
Ga0209403_100124107	F056907	N/A	MSGNAYYIPGDTGAGTKLPVGEYEATITALDVVDDVICGKFIADIFKPVYTVKHRDYPRADIKDNGIFRYKEKPGYSYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKFDTMDGFRVVIEVSYKNFVNESGNPVRYPVGTLKKKVGEVPF
Ga0209403_100124108	F021867	AGGA	MDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDIEEEPVEEKRQSKLMSEGECKEIIKTESEGSKAFVKAMVHVDAEGLEDDDLEKVLQALKTGKINMDNLQASLDKIYTIKQSYK