Basic Information | |
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Taxon OID | 3300027839 Open in IMG/M |
Scaffold ID | Ga0209403_10001065 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36880 |
Total Scaffold Genes | 45 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 37 (82.22%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 79.2466 | Long. (o) | -150.0613 | Alt. (m) | Depth (m) | 190 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F002078 | Metagenome / Metatranscriptome | 596 | Y |
F029567 | Metagenome / Metatranscriptome | 188 | Y |
F035963 | Metagenome | 171 | Y |
F059346 | Metagenome | 134 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209403_1000106514 | F059346 | AGAAG | MEKILESAWALFVAIGWFFINRITAKVDALEKEKADGSTVGRHAGLIHEVDRRIDELQHTTVPRQEYKSDIAGLHIRANELERSKEDKVTDIRIVSGDDFNTPKKGK |
Ga0209403_1000106515 | F035963 | GGA | VDKINEVVIAVSSGTLGVCLWICKRMFKSIDVAHERLDKLESKQVDRQYLENQLSPIRVDVNIILQHLLANKNREK |
Ga0209403_1000106517 | F002078 | GGAG | MEMFMSQSWFQIVGEVVLMFTALTGAMPDRFVNKIPVLGKLWPIFNWLAGNVFNNVNHPKGMAALREVEDELDKAKAEVRDRVKLPDVLDGV |
Ga0209403_1000106518 | F029567 | N/A | MFLTGCSILPELVAPATNFGMGLYNADSYYSKECLWYEEVKFSPTTKEWLKSAKPPAHVIKDVAKVARNNDLFKEVCKK |
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