Scaffold Ga0209403_10001065

Overview

Basic Information

• Taxon OID: 3300027839
• Scaffold ID: Ga0209403_10001065
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB11_86 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36880
• Total Scaffold Genes: 45
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 37 (82.22%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 79.2466
  • Long. (^o): -150.0613
  • Depth (m): 190

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002078	Metagenome / Metatranscriptome	596	Y
F029567	Metagenome / Metatranscriptome	188	Y
F035963	Metagenome	171	Y
F059346	Metagenome	134	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209403_1000106514	F059346	AGAAG	MEKILESAWALFVAIGWFFINRITAKVDALEKEKADGSTVGRHAGLIHEVDRRIDELQHTTVPRQEYKSDIAGLHIRANELERSKEDKVTDIRIVSGDDFNTPKKGK
Ga0209403_1000106515	F035963	GGA	VDKINEVVIAVSSGTLGVCLWICKRMFKSIDVAHERLDKLESKQVDRQYLENQLSPIRVDVNIILQHLLANKNREK
Ga0209403_1000106517	F002078	GGAG	MEMFMSQSWFQIVGEVVLMFTALTGAMPDRFVNKIPVLGKLWPIFNWLAGNVFNNVNHPKGMAALREVEDELDKAKAEVRDRVKLPDVLDGV
Ga0209403_1000106518	F029567	N/A	MFLTGCSILPELVAPATNFGMGLYNADSYYSKECLWYEEVKFSPTTKEWLKSAKPPAHVIKDVAKVARNNDLFKEVCKK