Scaffold Ga0209089_10385271

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10385271
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 780
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005217	Metagenome / Metatranscriptome	408	Y
F005464	Metagenome / Metatranscriptome	400	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_103852711	F005217	N/A	YRRDPIYGREELGFRHDPNSGISGEDPRFFLDLVDASIVAQGGKTEVQKYCLGVILLNHSSHRFFNAENLQWYSDLLHRIHKFEVFYSIPNYRIMDEFAFWVLMSKLSLRTSLFGDQDVSQTFLEKKHENHFNPIVLHYTTKDEEKFADWAPEFACLSRSEEEREDSDIGGGGIYNINPMMREELAMSMW
Ga0209089_103852712	F005464	GAG	VKSMNIKDKDTTLKIAGWVLSFLCMLIGSYFVWPHIHVALLGIVFFYLGIRVFNFSTFKEYKEDRVKLLL