NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10277568

Scaffold Ga0209089_10277568


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10277568 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)962
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Cytophagia → Cytophagales → unclassified Cytophagales → Cytophagales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027653Metagenome194Y
F071324Metagenome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_102775681F071324AGGAGMISFIIPFSTIEKDKFLNLNEKEDLWEENDSASIVDSTIKTIKNVNSLKCEKEILLMDNSHTWPEVDLPNVRAIKGWQALPLEELEKIPEYMNHKDIQASL
Ga0209089_102775682F027653N/ALKDNDEFHQRTVKMSWLRNTDLTPIVPNIDVFVNWLMDIKKHKYFNKFNYYLTGGFISWPEKTKDIDIIITKRDGQQATLKELEKLMVDMFDSAYDNHKFFLDTFYMRTPQWIADYPRDREILKSVENKGLWITITKHRPEYSNKFRRYGKLNCHHRPSFTNWWDDGEDLINRWVNLDAKYARWVDLRKIIKYYENKNKRNIEDFLNEFQEYSGY

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