Scaffold Ga0209089_10184479

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10184479
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1238
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005832	Metagenome / Metatranscriptome	389	Y
F018813	Metagenome / Metatranscriptome	233	Y
F070548	Metagenome	123	Y
F098058	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_101844791	F070548	AGGA	MANWNSKELQTPDVIKQIGQNAQNVMNNLDILLKLVKGGADVAKLFLLLANPAGLIIKLAANEIIKLCNDFKEIGVFYLFINPNDEGYGGQTSREFGLAIKQDENGLYQFVPSNRPGYGL
Ga0209089_101844792	F005832	GGGGG	MSKEGIWQDSGGMKDSELVEKWTKTLHTVEYAMEQLKHQKTVLMKKKEDVVNSKETQNG
Ga0209089_101844793	F018813	AGGAG	MMPCSIVGDMSIGHAGFSPAPITPIGGAAAKVLVMGSIPHVVDDVIGVHVLGNSAHGGKIAKVSSSVQAGGKGLARLMDKGDCGSLILGTGATVMVGG
Ga0209089_101844794	F098058	N/A	GTNFKVHFTIRAQKVHGQMGVYTGGQGTTTAASVLNTIDGWGDGFETGTGNYKDGYLYASVYNNTDSDRDDQVVVFSDQNNASSSTLDFNGNAFKHRDDPDDPDTEISILNEEALTNAYSNGDFTLLTSI