Basic Information | |
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Taxon OID | 3300027838 Open in IMG/M |
Scaffold ID | Ga0209089_10128725 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1538 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 177 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F015413 | Metagenome / Metatranscriptome | 255 | Y |
F029595 | Metagenome | 188 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209089_101287253 | F029595 | GGA | MKCFESPSGMKDTMMWHKRQSIRDFIRQKPMFSQLMQASKQCMRDNPHLKNDVKGAIQCETIHPQTLSSFSNFTFHTHPHNIPYPSQTDKNTTKELNKKYLLIGVVPQNKTYVFTNDDNFSKSIATI |
Ga0209089_101287254 | F015413 | AGG | VQSTDLEKQVNDLLNTPKFEQPDFEQLLPKGILGKDMLIGSAGTALSVQMGNIVGKFLPLGQLPTGTASILAGILMQKFGGSSSMLKKLSEGIIQGGIATAMTPFVSGLIPTFNQEVKETTEELNPIMKGVMW |
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