Scaffold Ga0209089_10076180

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10076180
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2106
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → unclassified Flavobacteriia → Flavobacteriia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007978	Metagenome / Metatranscriptome	341	Y
F054099	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100761802	F007978	GGAGG	MSITFNTDQIDGLIGTSITGIYGRIQSVTVKKYDATTDPSVAVQWRCLYDVVLHNSADTRNAAEESPEWGNRVRSRRIDHFTCTYDPTSNSNPYAQAYADLKTKLAADDPPIATSIADA
Ga0209089_100761804	F054099	GGA	MLASQEVYEDAQYQSSDPIGPQEPIPAGVHDLELSWDRKKGYMRVIIGTKTWYFKEFLGKAEITGTDNKRGRIYLKAMARIDGETLSTYRNPAALPHLEVEGE