NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10053743

Scaffold Ga0209089_10053743


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10053743 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2590
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007550Metagenome / Metatranscriptome349Y
F023712Metagenome209Y
F054936Metagenome139N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100537435F054936N/AMGKKYYKTPLNPRPNGKSGSLGKVADSWDDSDAMPHYTYSKGWWAETKRLVDESYARLVAKGFFDNTSDYWAKRRKTDPRLQG
Ga0209089_100537437F023712GAGMKYKITWKNEDTNRVSSKEFTGKDGKDHSAMDEALEVAQEADGNLWPWTLERDGQEVAYGWGGEGLTRGRLFPTCG
Ga0209089_100537438F007550GGAMKKLFLLFLFVCSVSINAASLKIVPVQQKTLPNGHAYGLASGVYFELTNLEPFIMYKLQYSEDLTKWTDLVNLGTYKMSMTSPYWTWDELPPHKCFFRIVVAW

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