Scaffold Ga0209089_10042244

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10042244
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2993
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006146	Metagenome / Metatranscriptome	380	Y
F022429	Metagenome / Metatranscriptome	214	Y
F022756	Metagenome	213	Y
F033079	Metagenome	178	Y
F062842	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100422441	F062842	N/A	MKWILIIAIALSFSGCARDATAEDSTEVTPAEQSLEKTTLTGKTNTEWIAIVMTWNPVIYTIDKEFTSEVECWNYYDNGAGETKMLNSY
Ga0209089_1004224412	F022756	N/A	AIEPRTPLWLRAIETLPPVEGFSRAGLFTINDKIYVQFCDPQGNQIWLRYNEGKHVWRQSRYNTQGCVDGERSTGPVE
Ga0209089_100422443	F033079	GAG	VVIEDKSIEISGNRLVWRHIQKENQKMILNPLGYDPLRDIDEIHHRNRRKTDDPYIKATRKKIAHHFPEINDAERR
Ga0209089_100422446	F006146	N/A	MIIATTTLIIVQVVVVGCVLWMNPEPCPRKYRVTQEQGGVLANMSDIHRYCELDYGGKFMLKEEFIEEINDAQQRLKD
Ga0209089_100422448	F022429	AGG	MSIGFREIWNGPSFLNRKPSALRMAARDGEGKKKREKSGKLKAREHFAKDWDVDLWD