Scaffold Ga0209089_10038863

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10038863
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3148
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021867	Metagenome	217	N
F041307	Metagenome	160	N
F056907	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100388631	F021867	N/A	MNRGSYPLRIGNAIRNIAHFSSLAVAGLKEYINKKDNTMDNNVEQVDWDKVNRGKVRYGFALELYKKGGELTPSGMGRIEAFVDFVMGDIEEEPVEEKRQSKLMSEGECKEIIKTESEGSKAFVKAMVHVDAEGLEDDDLEKVLQALKTGKINMDNLQASLDKIYTIKQSYK
Ga0209089_100388632	F056907	N/A	MSGNAYYIPGDTGAGTKLPVGEYEATITALDVVDDVICGKFIADIFKPVYTVKHRDYPRADIKDNGIFRYKEKPGYSYKPSRNWGFAKFCGILNLEQKDGDRITLPYLKVDMMDGFRVVIEVSYKNFVNESGNPVRYPVGTLKKKVGEVPF
Ga0209089_100388637	F041307	GGA	MKDEKTDEPVLFCGVATGYETRVAPLPECWLKMTSAMQTKYRKQKRAEYEALNPKKLDYKVIGTKRYKKSY