Scaffold Ga0209089_10031966

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10031966
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3544
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F098029	Metagenome / Metatranscriptome	104	N
F099432	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100319663	F099432	GAGG	MLRLSHLFESPAVDNEVLEMYITKIKKHLMDYEEHSTWEEYVDSCELGGCQYTAHAITNAFPEVTGIFGEIETDEGRDAETDGNMTHHWVEINGTSYDFAKGTLGDYVNWWDKYDVELGPDDWRYHPIHTRNEPSKLFSFKGRQN
Ga0209089_100319664	F098029	AGG	MRFEQLLEAKEIHDYRHEDMSAKIKPWAGGDKYIDPRDGFYWLFREGKLALYSTENEYYSFIVSMLQTASEEEKEIAKRSRLEFGKIPRIKDAHNKISSMWNQLSGLVNFQTMTLTISKESVGDAMRQRFIANIAEFKQALGSLKKFGLTDDFIIKGAPPDVPKTVGQALQMRDYVQKTFKDRDLVMWHGTSEARWEVIQNKGLHPGKTGEAYVDLVPNYSEHNVYLATTSKAAQYYARRQAKKDNSKGIVLQIQVPDPNKIVADDRYARAYGGKVTGRDSRQIKSSVKEIGEVGYNGWIPPKFISKK