Basic Information | |
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Taxon OID | 3300027838 Open in IMG/M |
Scaffold ID | Ga0209089_10013226 Open in IMG/M |
Source Dataset Name | Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6131 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured marine virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean |
Source Dataset Sampling Location | ||||||||
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Location Name | Arctic Ocean: Canada Basin | |||||||
Coordinates | Lat. (o) | 73.2247 | Long. (o) | -150.2247 | Alt. (m) | Depth (m) | 177 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F019751 | Metagenome / Metatranscriptome | 228 | N |
F050004 | Metagenome / Metatranscriptome | 146 | Y |
F065664 | Metagenome / Metatranscriptome | 127 | N |
Protein ID | Family | RBS | Sequence |
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Ga0209089_100132262 | F050004 | N/A | MVLYIKMDQKTWGQGDFTDSATYDLSGTVYDDNRFAVARNISGFTGTLRLIDQDGDSVFSTTENLTLGSDGTILIKFADGKTPTSQGIFKVRLRLEVSGTRLTCIGVNGSDEVYFEHD |
Ga0209089_100132265 | F019751 | GGAG | MTRTRGPDLSKEFHDYISSQWMFFGRNAYQISEQINKDTILMSKYGKTTPAGVHYHVKQIQQEMENTISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKSKGFDDMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPAIPMPEVEDHGVSK |
Ga0209089_100132266 | F065664 | N/A | MAGVAEIMCKYGAGDKVLQLEQFDTMGFHEYYGVTELFKDLQSLIKRAEYIQTNYDKIVIHDYSEFKLNFPKSKVILVFHGSKLRGLNEKELETVKDYPCYVTTSDLFDILPFAKHLPAPVDSDLFKKDVEGYGWISINRSYQRDLIEKRIKARYPDVEYYERNPGNIIRYEDMPDFLSQYKHYVDWKFTTDTIPLSLPDPSCTGIQALALGLTVHDKDGGTLSTNLLLIHDAKRITERFIYCILNC |
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