NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10013226

Scaffold Ga0209089_10013226


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10013226 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6131
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → environmental samples → uncultured marine virus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019751Metagenome / Metatranscriptome228N
F050004Metagenome / Metatranscriptome146Y
F065664Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0209089_100132262F050004N/AMVLYIKMDQKTWGQGDFTDSATYDLSGTVYDDNRFAVARNISGFTGTLRLIDQDGDSVFSTTENLTLGSDGTILIKFADGKTPTSQGIFKVRLRLEVSGTRLTCIGVNGSDEVYFEHD
Ga0209089_100132265F019751GGAGMTRTRGPDLSKEFHDYISSQWMFFGRNAYQISEQINKDTILMSKYGKTTPAGVHYHVKQIQQEMENTISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKSKGFDDMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPAIPMPEVEDHGVSK
Ga0209089_100132266F065664N/AMAGVAEIMCKYGAGDKVLQLEQFDTMGFHEYYGVTELFKDLQSLIKRAEYIQTNYDKIVIHDYSEFKLNFPKSKVILVFHGSKLRGLNEKELETVKDYPCYVTTSDLFDILPFAKHLPAPVDSDLFKKDVEGYGWISINRSYQRDLIEKRIKARYPDVEYYERNPGNIIRYEDMPDFLSQYKHYVDWKFTTDTIPLSLPDPSCTGIQALALGLTVHDKDGGTLSTNLLLIHDAKRITERFIYCILNC

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