Scaffold Ga0209089_10013226

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10013226
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6131
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → environmental samples → uncultured marine virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019751	Metagenome / Metatranscriptome	228	N
F050004	Metagenome / Metatranscriptome	146	Y
F065664	Metagenome / Metatranscriptome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_100132262	F050004	N/A	MVLYIKMDQKTWGQGDFTDSATYDLSGTVYDDNRFAVARNISGFTGTLRLIDQDGDSVFSTTENLTLGSDGTILIKFADGKTPTSQGIFKVRLRLEVSGTRLTCIGVNGSDEVYFEHD
Ga0209089_100132265	F019751	GGAG	MTRTRGPDLSKEFHDYISSQWMFFGRNAYQISEQINKDTILMSKYGKTTPAGVHYHVKQIQQEMENTISEDAMDTYIGEFIRARLGFEQDVIALEEIMADEKSKGFDDMDKELYLKFARTRHEIKLDSFKMLQDSALPLQVKKLKMERAKLRPAIPMPEVEDHGVSK
Ga0209089_100132266	F065664	N/A	MAGVAEIMCKYGAGDKVLQLEQFDTMGFHEYYGVTELFKDLQSLIKRAEYIQTNYDKIVIHDYSEFKLNFPKSKVILVFHGSKLRGLNEKELETVKDYPCYVTTSDLFDILPFAKHLPAPVDSDLFKKDVEGYGWISINRSYQRDLIEKRIKARYPDVEYYERNPGNIIRYEDMPDFLSQYKHYVDWKFTTDTIPLSLPDPSCTGIQALALGLTVHDKDGGTLSTNLLLIHDAKRITERFIYCILNC