Scaffold Ga0209089_10007562

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10007562
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8602
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (61.54%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004439	Metagenome	438	Y
F006919	Metagenome	362	Y
F076495	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000756211	F004439	N/A	MITFKGFLAEARGTSLSDLLFLPRIGYYDQLMIPISSPMFKRIWPDTLRATVFHTTDADGIKSISKLEGQKKSISAFFEMQSRYMEVGVATQGGVHAVLEMDADVLLSASGDVMSHIDRTGRRWTSISDLKETSRFVKFAAVEKSLEKMFEALVDKYLKRGEFQQSATSFQLWSMAKTKVDNKTLSLIIKDYMDGMEKVIKRNIDTFSSAMLGYAKKRSTDLSWDEQVVNNIKVKTAHFFQLKLLRGENSLSPEQQELIEFAESKGWSIKMWDAAIELEAYTRAVAKKELGK
Ga0209089_1000756212	F076495	GGA	MITFKELVKFQKVTVKDKSGKSHTQQTRIRPDTTHVAIMHYGAIAGTNFATAVKANTSLNFGTEKSLDKVISHAKKKFNLKTVEIQKLDKKYL
Ga0209089_1000756213	F006919	N/A	KSKRKKERRMKSFKQHLREFSIRSTSDIAFEVGSQGQASSALKIPISGPMFKRIWPDTIRATVFHSTDADHLAGLKKLEGKKKSISAFFSMMANQMEGGIATDGGIVVEMEADILVSSKDDIMSQVDKTGRRWVEMSWFETALGRNIPAGYNKVERELNVLIRNLVLKHLEPILGDKARTEHEFYLWADMKRHLKDGKKLSLVIKDYFDGVEKVLKSNKKVMGDIFYSYVKKRMNDGAWDEQIVNNIKIKKVHILSDVVDLDDLHDMYPKGLVREFPDVRFWDASIELEIYTKQVAKTELSK