Scaffold Ga0209089_10006561

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10006561
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9392
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (76.19%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012639	Metagenome / Metatranscriptome	279	Y
F015413	Metagenome / Metatranscriptome	255	Y
F017933	Metagenome / Metatranscriptome	238	Y
F024225	Metagenome	207	Y
F029595	Metagenome	188	Y
F036475	Metagenome	170	N
F037479	Metagenome / Metatranscriptome	168	Y
F071255	Metagenome / Metatranscriptome	122	Y
F104046	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000656110	F012639	AGGGGG	MSSNNSGLVLNCTANYAAAAPIATVSPCLLQTSPVVAGVNELQVPLTENWIATDVYILATGNAAGNPTAVDPVITMDKNRGRILVQTPPLSAMLITSNTRPRFSPQPIGFEGGSIVRMFATSTVLNAGVASNVQFSVAISIV
Ga0209089_1000656111	F015413	N/A	MESTDLEKQVNDLLTTKFEQSPEFEQLLPKGILGKDMIIGSVGTALSVQMGNVVGKFLPLGQLPSGTASILAGILLQKFGGSGMLKKLSEGIIQGGFATAMTPFVSGLIPAQFSQEVKTEQVTEELNPIVKGVMW
Ga0209089_1000656112	F029595	AGGA	MKCFESPSGMKDSMLWHKRQSVRDFVRQKPMFSQLMQASKRCMQANPHLKNDVKGAIQCETIHPQTLSSFSNFTFHTHPHNIPYPSQTDKNTTKELKKKYLLIGVVPQNRTFVFTDDDNFSKAIATI
Ga0209089_1000656117	F071255	AGGA	MSEENKDDFSKLSSSLKENLSEEFSTLKGSINDLSDKMSLTEKETDGMTKVSDFVEHLQTCENNNCEIHKAQNTLNNNNYMKGFLLGAKFGKQKRN
Ga0209089_1000656118	F024225	AGG	MKINFTTLNIDKKLYEKSILTYIYDHYYFNDHNKIQIQDLWEINIRTLKDFKWNFYDKEIKNLSKEMPHGVTGNNVIQCYVNDENNRMYYLQNMMIIAHELSHMILKIYYPKIRGKLTYDDTWGKAGEERNFFSTEIHNRVYEGKTRKLTTWHDNKEYFFYGVDIEDLTNKRNINHGL
Ga0209089_1000656119	F036475	AGGA	MTPMQKLTLDILNDCMSIVEKRVTNPIYKKVIVSMGYPYAKKEILRTSDEELKKDMNLVYNRLKKHFTKKQLKDEIDFSNSISDIKVPKFLSEQVGDYF
Ga0209089_100065613	F017933	GAGG	MQEAIMAISLIGFSTMISVMVFNSRKNDSLIRNLCDRIARLEGMLEIKFMENKK
Ga0209089_100065614	F037479	N/A	MWNFGGGGTETILGVANFNIPSHTENVCFNEKVMFSGQITNLSRELIHVTVNGFGSAQSFHRHDLRAYESLTLHNVPIASMSIYIPPGLSCGVHGMGSLVQCEDEDEYAIALAKSSMTEALPNSPNFNTDSYTRVTQAAAATVDLVVSGTLDDFAAYKITVSPVAAQIVDLFWTDSVNGNINFIGNLNFASSGTFVYDFPDSMMRNPNRQGGKLRMTTSTAASTVVDVIGHIVTEGQ
Ga0209089_100065616	F104046	GGA	MLNKTVQWNTHTLSGGVPVFAFNTKQKFAPQPLDNVFDTGGFDNINPNKFRGKRTGGELNFEQYQGHNVNFSQPYHAPQNNNSWENNILWVVNPYRNYQLRVSGQ