Scaffold Ga0209089_10006072

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209089_10006072

Scaffold Ga0209089_10006072

Overview

Basic Information
Taxon OID	3300027838 Open in IMG/M
Scaffold ID	Ga0209089_10006072 Open in IMG/M
Source Dataset Name	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	9829
Total Scaffold Genes	27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	16 (59.26%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location Name	Arctic Ocean: Canada Basin
Coordinates	Lat. (^o)	73.2247	Long. (^o)	-150.2247	Alt. (m)		Depth (m)	177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018265	Metagenome / Metatranscriptome	236	Y
F049706	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000607211	F049706	GGAGG	MKFEKEHPYMKRLDEVLKQFVIVKVDVEEVERGEDSEDYEEMKQIILDALFMRYAGETIR
Ga0209089_1000607217	F018265	AGGAG	MSMEKHTLRAVKITKSIFELRKINRDIEEVSKIMDTLQQRKFNLESSFGDCI

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