Scaffold Ga0209089_10005011

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10005011
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10919
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003827	Metagenome / Metatranscriptome	466	Y
F005883	Metagenome / Metatranscriptome	387	Y
F025767	Metagenome / Metatranscriptome	200	Y
F054930	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000501116	F005883	AGG	MQIQVSGVSGMVYRRGHQIVLMNTETDKKIAVKVIQYDSKQGWLAENGEGDWSWYRELRQDSDPTDLQYWTYVKKVGT
Ga0209089_1000501119	F054930	GGAG	MIQKERVMTKEDKKLRMVKEGEGGGAPTPVSKLDDEELTSLSMGKYKVFTNGAEEKDLKGKYLAVNTDHLVSVFPIEDKTVLFSAGGNSWTVAEDFATVLKRLNDWY
Ga0209089_100050115	F003827	GGAGG	VAEGLWADWQVKLIAENMSEKCPKREWFDDEGRPEGYATSLKSWSHITARQLYSMELEERQLIIFIHHLGIEHVGMQTFDPQDTRQLTDFKPHEGR
Ga0209089_100050118	F025767	N/A	MEYRMINPETVKAEDVSCSVADMETLKQEGWVMMFTPNRNSIISSRDHSGQGGGHGTSDGWKDVLRRIKANNPKSTIDV