Scaffold Ga0209089_10001535

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10001535
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21188
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 32 (74.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003898	Metagenome / Metatranscriptome	463	Y
F007345	Metagenome / Metatranscriptome	353	Y
F021646	Metagenome / Metatranscriptome	218	Y
F087031	Metagenome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_1000153510	F087031	AGGAG	MSKKEKEPTYKLFDKEYTQADLDAFSDEQKGMIQHRDDLMIKINRSEFNLIQLQFGLKAFEDGLKASFEEE
Ga0209089_100015354	F007345	AGGAG	MEWLSMNWEWVLLGFMVAEKLVKMSPSDKDDILLDVIIQGLTKMVKGEKK
Ga0209089_100015355	F003898	GGA	MEKAMDSLRITGISTSLGLVYWTDLLSGVLMCVMFSAQIYYLYLKTKKIKES
Ga0209089_100015357	F021646	N/A	MRKILSIIFYHIGHFADRLLWFNSPMSEWIEDKLADLYQWAMWQSVEFDDYCEIWQSDNQITR