NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209089_10001057

Scaffold Ga0209089_10001057


Overview

Basic Information
Taxon OID3300027838 Open in IMG/M
Scaffold IDGa0209089_10001057 Open in IMG/M
Source Dataset NameMarine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)25013
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (79.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location
Location NameArctic Ocean: Canada Basin
CoordinatesLat. (o)73.2247Long. (o)-150.2247Alt. (m)Depth (m)177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003827Metagenome / Metatranscriptome466Y
F013898Metagenome267Y
F017842Metagenome / Metatranscriptome238Y

Sequences

Protein IDFamilyRBSSequence
Ga0209089_1000105718F017842GAGGMPSYTMKDPDGVEHELLCSIAEMEEKKEQGWRTQIGAPRNNLIRHTGDVISHTDEGFKDRLRNIKKNHPGSTIEI
Ga0209089_1000105719F003827AGGAMTEGSWGDWQVRTIAANMAEKCPKRVWFEDGDEDVDYKDYFTSLKSWSHITARQLYSMELEERQLIIFIHHLGIEHVGVETFDPQDKGRYSQQSDFRPIEGKE
Ga0209089_1000105735F013898N/AMEEEITQQSFECEQCGAEYSLQTNMDMTAEFCPFCSEPIEILEWNDNENEFGEGEG

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