Scaffold Ga0209089_10000051

Overview

Basic Information

• Taxon OID: 3300027838
• Scaffold ID: Ga0209089_10000051
• Source Dataset Name: Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_150 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105437
• Total Scaffold Genes: 152
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 91 (59.87%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean

Source Dataset Sampling Location

• Location Name: Arctic Ocean: Canada Basin
• Coordinates
  • Lat. (^o): 73.2247
  • Long. (^o): -150.2247
  • Depth (m): 177

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F017721	Metagenome / Metatranscriptome	239	Y
F030785	Metagenome / Metatranscriptome	184	Y
F054945	Metagenome / Metatranscriptome	139	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209089_10000051103	F017721	GAG	MSFREIWNGPSFLERGDAAYRMRARDNAGKKTKKTNKHITHEHFNKEWDKDLWD
Ga0209089_10000051110	F007055	N/A	MIWIAIVMTWNPVIYTIDKEFSSEVACWNYYDNGAGETKMLNNYGIQVLDHQDNKPNKDYMKKHRPAHRIYPTRMYKNFGGSLVWLTCDIKGRNEGL
Ga0209089_10000051118	F030785	AGGAG	MKKKTATIEILEKDEKVLGSRTRGEYMVRRYEDGIEMSGEFFYTLAEAGGAIREWEGIV
Ga0209089_10000051141	F054945	N/A	MKWVIIIYLAIWTNTPDAVKHTRLEFPATDFQECIDIAEQINDIANRGHNSDVSLPRVSWVYNNMLDEIKAECVFEEPPPPASKWLEKKKRDRNKLSKLKMPE