NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209230_10120357

Scaffold Ga0209230_10120357


Overview

Basic Information
Taxon OID3300027836 Open in IMG/M
Scaffold IDGa0209230_10120357 Open in IMG/M
Source Dataset NameFreshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1476
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Bacteroidia → Marinilabiliales → Marinilabiliaceae → Carboxylicivirga(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location NameCanada: Lake Ontario
CoordinatesLat. (o)43.933506Long. (o)-78.003845Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003299Metagenome / Metatranscriptome495N
F003327Metagenome / Metatranscriptome494Y
F004234Metagenome / Metatranscriptome447Y
F015420Metagenome / Metatranscriptome255Y

Sequences

Protein IDFamilyRBSSequence
Ga0209230_101203572F015420N/AMKKLIKYFTPVGEEQIAFAKAFIIVTSVTLSILFLFTFLELIL
Ga0209230_101203573F004234N/AMNFIDLYKRENTYFSNWTTDYDSDVYIAGTIEPFTYDATETDDGDMSLFILSDANLNLLKSKL
Ga0209230_101203574F003327N/AMTEFTQLAREVQDAIANGDYTHQKYLQFREWYFQNYEGSKRNANRDFAMFDLMYGLDVPIKNDDNEDI
Ga0209230_101203575F003299N/AMKIYKVVYKTFDYWNGPVKLVTKIVEAYDADHVKQLIQKNDDLILLIEEV

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