Scaffold Ga0209230_10012736

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10012736
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3848
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000441	Metagenome / Metatranscriptome	1136	Y
F001043	Metagenome / Metatranscriptome	794	Y
F001507	Metagenome / Metatranscriptome	681	Y
F036238	Metagenome	170	Y
F082666	Metagenome / Metatranscriptome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_1001273610	F036238	GGCGG	MGDRANFGFKQSNDETIVLYGHWAGHDMLSNLAEAVEKARPRWTDESYATRIVVSNLIGDNWHETTGWGLTVNNILDNEHKIPVIDWRSGTFSLHEEASWEEDTKVKGMMDEPMFTMTLDSFINKYSRVEA
Ga0209230_1001273612	F001043	AGGAG	VSDYRDGFEDGYKFAREEMMEKLSEIDIADIDSWILDRLSEMIEGGAL
Ga0209230_100127363	F000441	AGGAGG	MKMSDEYINDQLNKAQQLLWGGSETENIEAHNIISKLIKDRVEQVDLV
Ga0209230_100127365	F082666	AGGAG	MIETAEALPESIQRAVDLGISGIDIMHGELKIMMLVAEQELALAIEAEELSEEAMDSMERTRCEGVLDTLVELYRLTYDISFAIGEKNDN
Ga0209230_100127368	F001507	AGGTGG	METKPYAIHELVTAIYEDNYSHFEFMENMNGGDCDCILHQTMNIIAAYQEGLIEGPWGE