Scaffold Ga0209230_10011585

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10011585
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3999
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001599	Metagenome / Metatranscriptome	665	Y
F105020	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_100115853	F105020	AGTAGG	MKCSHLSRVKEWGFTPEHDFKVTMYDCVFCGEESPIPFDREEAKISIDHTQCDEDCFGCKAKGLQLNTGDASRDIPDKKWNSELKAYKDARAQGIQPSGTTRAHVEQAYTASETLGQAYDADSMPKAKDITTRAVEVMKEIGQI
Ga0209230_100115858	F001599	N/A	MVDGKFMQGVTDVMLKSGVTFATTLRSAGNQIARQRDKVINYWYDNNKSDWLFWVDSDVVVSPDTFNLLWESKDATERPIVSGVYFTTDQPEEPLMTPLPTLFNFVEGDETVGVARIHPMPVNELIKIGAAGMGFVLMHRSVVEKIKEAAPGAPIFSDIGHGKNFLGEDIYFFALCDKADIPVYAHTGATAPHIKRFSFDEHYYNAFFGGVREEQKKSNLIVPKQGLITPTKG