Scaffold Ga0209230_10002512

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10002512
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7524
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002934	Metagenome / Metatranscriptome	519	Y
F025974	Metagenome / Metatranscriptome	199	Y
F063483	Metagenome	129	Y
F074577	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_1000251210	F074577	N/A	MARKRPTIDLDTYSALDAVAIAYNEWYKSLRRAGFSETHAFWILGDRDAFPDWLIPNLPNRIDNLPYEDDDED
Ga0209230_1000251214	F063483	N/A	MNHDYIIIASLALGGIVGFLLGYSQGHEHGKIAGRIDYRRAQRALEQVGR
Ga0209230_100025126	F025974	GGAG	MPNNPTRIVIDCSTGIEEIIELTDAEVAELAYQAELAAEKKAEEDAKAEADATAKAALLKKLGITADEAKLLLA
Ga0209230_100025128	F002934	AGGAGG	MNMKNPYLMSLGAFLAVWGTTSNFSLDYRSILGSLVAGVFGYATPKK