Scaffold Ga0209230_10000453

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10000453
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 16130
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (67.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002268	Metagenome / Metatranscriptome	576	Y
F005563	Metagenome / Metatranscriptome	396	Y
F011276	Metagenome	292	Y
F031870	Metagenome / Metatranscriptome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_1000045321	F031870	GGA	MIDYTDYMVMPCGGVAYYDEPTNGMNYYCAQCECIVGSDAMPKACKEEEAKWEMWKDLGGKGWDYFAEPDEYF
Ga0209230_1000045325	F005563	AGGTGG	MIDYYEALKEMHKGNVIKYIGTVNGNVMSDNGASFCMCRGCIFLFDDGEIKWNKLGYMVYDPDFRYELTGKTVDPRAWKPEKKRKDRSIKSMLGFSRIGLGNV
Ga0209230_1000045338	F011276	GGAG	MIKGLMGTCGVTVSAGNTTLPYVGPNVNNPMTGMIRINNTELEVFNGTSWQMISSSYATVSLDQEILDVIQWARAQRTMAMNRLTLAQNNPALMKALEKLKKAEDDFELLSKFVEHDEPGIVVGYNFNNP
Ga0209230_1000045343	F002268	GAGG	MSGTPADKGPGITGFIEIFEGRLTKMKLHLKEELGKAKNDRDRKAIRRITADARKLNRTLKEMRNASARLCPHCGERL