Scaffold Ga0209230_10000014

Overview

Basic Information

• Taxon OID: 3300027836
• Scaffold ID: Ga0209230_10000014
• Source Dataset Name: Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 77673
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 59 (72.84%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location

• Location Name: Canada: Lake Ontario
• Coordinates
  • Lat. (^o): 43.933506
  • Long. (^o): -78.003845

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F018716	Metagenome / Metatranscriptome	233	Y
F019762	Metagenome / Metatranscriptome	228	Y
F024559	Metagenome / Metatranscriptome	205	Y
F026795	Metagenome / Metatranscriptome	196	Y
F032649	Metagenome / Metatranscriptome	179	Y
F033308	Metagenome	177	Y
F043407	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_1000001413	F026795	AGAAGG	MAKNYNDYSYFENRADVVKIFDDLESFHNFCRMELIEFNEAYLYNRESWQWRNYEKSTRPRKAWTGERKPYQGKNPRPQYNNNKSYN
Ga0209230_1000001425	F043407	GGA	MTTILKNVKTVNNIGPGYGAVPTISTAPLTIGQVYTTNSTAGQFLTSATNGTNWANSNDNVMIVKQDPASLEVKGRMIINGVDLEERLKTIERVLTIPERDVKLEAKHPKLKKLYDEYIAALGKYRTFEAIKGEENGTT
Ga0209230_1000001426	F019762	AGGAG	MELHESVAHTRREMTIKESEGFRVRVTKHEVINPKGLFSLDIIQESLKDGKVIDSQTYNFFMTKDELQTLAHGLTL
Ga0209230_1000001429	F024559	GGAGG	MMTSLIKLIFGITLILLVIVFGPLLGIWSLNTLFPVLAIPYTWQTWAAYFLIFGSLTGLRFGSKK
Ga0209230_1000001431	F018716	GGA	VNKDNNTVTVVWDNQNGFWWNETCAMVLEVFGLPGDRYESKPDHDYMSFNFKNQKDADLCRILLSERL
Ga0209230_1000001434	F002977	AGCAGG	MIVTQPPAEGIMKTNDWGDSRVYRIACNCGDENHNHNMWVEADDCDIIVTIYTTGKTNYWSKTRWYHIWTLLTKGYVDTESSVHLNRQQALNYAETLKSAIHDVEVFRNNRQNKEERAIVKKMANEQDCI
Ga0209230_1000001435	F033308	AGGA	MNTAKQLTDELIYRMKTTDLNKFEIKREVGENWLPQGTVPFDLYASKGVATFTVWAESIQDAEHQVSQFLERDEDE
Ga0209230_1000001457	F032649	GGAG	MDERIEKAFAIANRMATLANQRRIVLEEFNQKLVYYENGGTFKIGPELVNFTKSVLDLGYTHDVPFIDVNKFPIVITDVQEFFDKILLLYMNSINEYSVKFAHLASQRKIEDIVAL