Scaffold Ga0209230

Basic Information
Taxon OID	3300027836 Open in IMG/M
Scaffold ID	Ga0209230_10000011 Open in IMG/M
Source Dataset Name	Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027836 Open in IMG/M

Scaffold ID

Ga0209230_10000011 Open in IMG/M

Source Dataset Name

Freshwater and sediment microbial communities from Lake Ontario - Sta 18 epilimnion Metagenome (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	99265
Total Scaffold Genes	175 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	131 (74.86%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

99265

Total Scaffold Genes

175 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

131 (74.86%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

8 (88.89%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater And Sediment → Freshwater And Sediment Microbial Communities From A Dead Zone In Lake Erie, Usa

Source Dataset Sampling Location
Location Name	Canada: Lake Ontario
Coordinates	Lat. (^o)	43.933506	Long. (^o)	-78.003845	Alt. (m)	Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Canada: Lake Ontario

Coordinates

Lat. (^o)

43.933506

Long. (^o)

-78.003845

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F000447	Metagenome / Metatranscriptome	1128	Y
F000808	Metagenome / Metatranscriptome	882	Y
F001507	Metagenome / Metatranscriptome	681	Y
F011386	Metagenome / Metatranscriptome	291	Y
F011487	Metagenome / Metatranscriptome	290	Y
F011563	Metagenome / Metatranscriptome	289	Y
F029107	Metagenome / Metatranscriptome	189	Y
F039631	Metagenome / Metatranscriptome	163	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209230_100000111	F011563	GAGG	MSDVNANISVNIDTSAALGELKNLQRQISQFHNQIAKSSASAAIAQRNLQQEFVNSINSTGQFAARMQTIKTSAESFTNSLEKNKFSMREYFRYGVASSKSFGKVFKTEFETINKVAEERVRKLQTQYIKMGRDASGAMKAIAVTPLALDM
Ga0209230_10000011161	F000264	AGG	LTNNAMAAKLYTSEAFMRKRYLMDKKTPEEIAKECGCTVETIYVYLAKFGLRKSKR
Ga0209230_1000001147	F029107	N/A	MTIHLTPQLSTTDATRLTPEGLHSGMDITIQNLHDSGYVYLGGEGVNSEEFGYRLAPGAAWSVELPGQDALYAIGSTPSIYIAVLQTGLE
Ga0209230_1000001154	F011386	AGGA	MKLTLTSMQGNTRDINLDTKELVMDFIDIYKSTLLPHQRVKITCDLLGIDGYLQGVSK
Ga0209230_1000001155	F039631	AGG	MNTLDKNTIKHSRYGHLDLEARINLAATMVANGEVLSFRGASADTYNKVMAIANRIKLEREFPQCPCGECD
Ga0209230_1000001163	F000447	AGG	MGYIEIFRIDNDGAGWIDLAQANENELFNLELGLLNEGALFSTKEAN
Ga0209230_1000001164	F000808	AGGAGG	MEYNYSLTISYDGDLVSTTRSADMLEMVTAWNKCVDFGDAKEYATYNLSDPMGKMYTKTFYRNGNVSVK
Ga0209230_1000001167	F011487	AGGAG	MANMYEDEMFDEYYSTTCPECKENAVDAYEEKCTHCLLEEMSAMYNEDIALEMSLGLDY
Ga0209230_1000001175	F001507	GGAG	MTQTPYKPYTIDELVTSIYEDNYSHFEFMENMNGGECDCVLHQAMWLIMKHWEGEDVE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209230_10000011

Overview

Ecosystem & Geography

Associated Families

Sequences