Scaffold Ga0209092_10093681

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10093681
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003769	Metagenome / Metatranscriptome	469	Y
F038091	Metagenome	166	N
F077379	Metagenome	117	N
F101904	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100936811	F003769	AGG	MQTQTQQLKTITVTTSNSVESVHIDTLYTVLTNCFNKLQLVEADCTGSNYYINSANIFAQLQLLYVENADNDYVSLQSVMDVFANNITYYDESSLFTQVVENTVLQNVVLENYVYLSN
Ga0209092_100936812	F077379	N/A	VLHYKNNNNLAGQNMLTQKALNKKLTATLCTTTNTIFIHKNNKAHLQYTVNSSKVIHNANAQQLQAFYKLPSTLMQKTKNFNKLINTNLLKQLFTTH
Ga0209092_100936813	F038091	AGG	MQRITNTNTLIVVDPIMSPLFTAQLITVSSYNKLTAQTQQDISVVAYSKQAYSNAMSLSYNAQSNAYVVYNVTQNLSYSVAV
Ga0209092_100936814	F101904	N/A	MQNLQVHYTYKTKNATVQDLCIVQSKTKRFTKTQQLNTQLKLATQLNLKHFYAVTLTHYSVI