Scaffold Ga0209092_10083786

Overview

Basic Information

• Taxon OID: 3300027833
• Scaffold ID: Ga0209092_10083786
• Source Dataset Name: Marine eukaryotic phytoplankton communities from Arctic Ocean - Fram Strait ARC3M Metagenome (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1913
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Eukaryotic Phytoplankton Communities From The Norwegian Sea, Arctic And Atlantic Ocean

Source Dataset Sampling Location

• Location Name: Fram Strait
• Coordinates
  • Lat. (^o): 69.2303
  • Long. (^o): 7.7302
  • Depth (m): 10

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015151	Metagenome / Metatranscriptome	257	Y
F022016	Metagenome / Metatranscriptome	216	Y
F055210	Metagenome / Metatranscriptome	139	Y
F076507	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209092_100837861	F076507	N/A	KEKGMWRLVEQLERDLERRELLKMPALEAVKEKDARMVWEEEVDDWAD
Ga0209092_100837863	F055210	AGGAG	MLDLNTTFSAPGSVVTPMLRSFMSTFQVGIRNRDAVSPVSRNMYVKAFGSEEAVGIASLLIKPYDMVVTGVMSAGSEGYGEEDVSDADPLPLLKSKGEPVTDDLFGF
Ga0209092_100837864	F015151	GGA	MITLKNGLIISADNDGFESYNHLTSKIDPKSFTKFKELPDIFYKEMGSDDRTLLTKVDNPELATILQRTKRYGI
Ga0209092_100837865	F022016	AGGA	MAFEMYKTHKLSDHLESEAYDHCQWAIAGFYDLELTENEYGYEQGVEEVLTIEQINEIEAYVDEWSSPNKWHEPYCISALTTIIDRWYEENEVLTDEP